Springbok captain Victor Matfield paid tribute to his side's staunch defence as the world champions withstood a late rally from Wales to win 25-29 at the Millennium Stadium.
The victory kept South Africa's hopes of a Grand Slam alive after they brushed aside Ireland last weekend.
South Africa were 17-9 behind at the break but scored 17 unanswered points in the space of seven minutes to grab the initiative from Wales.
Wales refused to cave in and mounted a fierce late rally but couldn't breach the green wall.
"I'm very proud of the boys, they showed great character," said Matfield. "Wales put us under pressure and it was a great game for the spectators to watch.
"Well done to Wales, they really came out and played well. "(Defending) is something we really worked hard on (in training) and it came through and we were happy with that," he added.
Referring to a possible Grand Slam, Matfield said: "I don't know. There's still a fair way to go. We're focusing on Scotland and that's going to be another huge game. We will enjoy tonight and then start fresh from zero on Monday again."
Wales Head Coach Rob Howley talks to WRU TV's Sebastian Barrett about the 36-man squad he has just named for the forthcoming Under Armour series, which includes two uncapped players, Ospreys duo Sam Davies and Rory Thornton.
Head coach Rowland Phillips is deligthed he can now call BT Sport Cardiff Arms Park home for his Wales Women's side, who launch their international season next month with games against Scotland and UK Armed Forces in the heart of the capital city.
Wales Sevens star Sam Cross has put his home town club of Brynmawr on the map after winning a silver medal at the Rio Olympics with Team GB. His club have now honoured him by naming their players bar after him, as WRU TV discovered at the official launch, recently.
One of the newest members of the Principality Premiership, Bargoed admit it's proving to be a steep learning curve at the highest level, but are determined to become a force to be reckoned with. WRU TV visited the club last weekend when they took on Llanelli.
Table-topping Aberavon travel to north Wales to tackle RGC 1404 as both teams defend unbeaten starts to the season in the Principality Premiership. WRU TV's Graeme Gillespie visited the Wizards to see how their preparations were going for the game of the weekend.
The Half a Game initiative is currently sweeping across Wales and proving a major success. The scheme aims to give every young player at least half a game every weekend. WRU TV recently visited a festival in Narberth where clubs have fully embraced the initiative.
Both Bargoed and Swansea were seeking their first win of the Principality Premiership season this afternoon. It proved a fruitful day for the hosts - not only did they win, but Bargoed claimed a try bonus point.
Cardiff managed to keep their unbeaten record at home intact, but only just as Bridgend made them work extremely hard before the Blue and Blacks secured a hard fought Principality Premiership win at the BT Sport Arms Park last night.
Former Wales back row Andy Powell gives a guided tour of The Wern, home of Merthyr RFC, who are determined to prove a lot of people wrong and make their mark in their first season in the Principality Premiership.